STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl1565Predicted transcriptional regulator. (228 aa)    
Predicted Functional Partners:
sufB
Component of an uncharacterized iron-regulated ABC-type transporter.
  
    0.975
sufD
Components of an uncharacterized iron-regulated ABC-type transporter.
  
    0.822
Cgl1560
NifU homologs involved in Fe-S cluster formation.
  
  
 0.762
deaD
Superfamily II DNA and RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
      
 0.700
Cgl2141
ATPase component of ABC transporters with duplicated ATPase domains.
  
  
 0.692
sufC
Iron-regulated ABC transporter ATPase subunit.
  
    0.691
lcpB
Cell envelope-related transcriptional regulator.
  
    0.685
rpmC
50S RIBOSOMAL PROTEIN L29; Belongs to the universal ribosomal protein uL29 family.
      
 0.683
Cgl1568
ABC-type multidrug transport system, permease component.
 
     0.670
nifS2
CYSTEINE DESULFHYDRASE / SELENOCYSTEINE LYASE; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
    0.649
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.