STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cgl2612Bacterial regulatory protein, TetR family. (177 aa)    
Predicted Functional Partners:
Cgl2611
Permease of the major facilitator superfamily.
 
  
 0.998
cg2808
Transposase.
  
    0.879
Cgl2613
Permease of the major facilitator superfamily.
  
    0.795
amtR
AMTR PROTEIN.
   
  
 0.608
Cgl1580
Transposase.
  
    0.568
Cgl1992
ABC-type peptide transport system, permease component.
   
    0.476
Cgl1203
Membrane protein, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-pho.
   
  
 0.459
priP
PROPHAGE DNA PRIMASE.
  
     0.418
poxB
PYRUVATE DEHYDROGENASE; Belongs to the TPP enzyme family.
 
    0.408
Your Current Organism:
Corynebacterium glutamicum
NCBI taxonomy Id: 196627
Other names: C. glutamicum ATCC 13032, Corynebacterium glutamicum ATCC 13032, Corynebacterium glutamicum str. ATCC 13032, Corynebacterium glutamicum strain ATCC 13032
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