tll0443 protein (Thermosynechococcus elongatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tll0443

ABC transporter ATP-binding protein (531 aa)

Predicted Functional Partners:

tlr1151

0.972

tlr1261

0.967

tlr1197

0.967

tll1105

0.962

tll1458

0.935

tll0810

0.899

psbO

0.829

tlr0704

0.627

tll0442

0.612

tsl0441

0.453

Your Current Organism:

Thermosynechococcus elongatus

NCBI taxonomy Id: 197221
Other names: T. elongatus, T. elongatus BP-1, Thermosynechococcus, Thermosynechococcus elongatus, Thermosynechococcus elongatus BP-1, Thermosynechococcus elongatus str. BP-1, Thermosynechococcus elongatus strain BP-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psbO	tll0442	tll0444	tll0442	Photosystem II manganese-stabilizing polypeptide; Part of the oxygen-evolving complex associated with photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation	Transposase	0.593
psbO	tll0443	tll0444	tll0443	Photosystem II manganese-stabilizing polypeptide; Part of the oxygen-evolving complex associated with photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation	ABC transporter ATP-binding protein	0.829
psbO	tsl0441	tll0444	tsl0441	Photosystem II manganese-stabilizing polypeptide; Part of the oxygen-evolving complex associated with photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation	Transposase	0.440
tll0442	psbO	tll0442	tll0444	Transposase	Photosystem II manganese-stabilizing polypeptide; Part of the oxygen-evolving complex associated with photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation	0.593
tll0442	tll0443	tll0442	tll0443	Transposase	ABC transporter ATP-binding protein	0.612
tll0442	tsl0441	tll0442	tsl0441	Transposase	Transposase	0.621
tll0443	psbO	tll0443	tll0444	ABC transporter ATP-binding protein	Photosystem II manganese-stabilizing polypeptide; Part of the oxygen-evolving complex associated with photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation	0.829
tll0443	tll0442	tll0443	tll0442	ABC transporter ATP-binding protein	Transposase	0.612
tll0443	tll0810	tll0443	tll0810	ABC transporter ATP-binding protein	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	0.899
tll0443	tll1105	tll0443	tll1105	ABC transporter ATP-binding protein	Peptide ABC transporter permease	0.962
tll0443	tll1458	tll0443	tll1458	ABC transporter ATP-binding protein	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	0.935
tll0443	tlr0704	tll0443	tlr0704	ABC transporter ATP-binding protein	Asparaginase	0.627
tll0443	tlr1151	tll0443	tlr1151	ABC transporter ATP-binding protein	Permease protein of oligopeptide ABC transporter	0.972
tll0443	tlr1197	tll0443	tlr1197	ABC transporter ATP-binding protein	Permease protein of oligopeptide ABC transporter	0.967
tll0443	tlr1261	tll0443	tlr1261	ABC transporter ATP-binding protein	Oligopeptides ABC transporter permease protein	0.967
tll0443	tsl0441	tll0443	tsl0441	ABC transporter ATP-binding protein	Transposase	0.453
tll0810	tll0443	tll0810	tll0443	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	ABC transporter ATP-binding protein	0.899
tll0810	tll1105	tll0810	tll1105	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	Peptide ABC transporter permease	0.958
tll0810	tll1458	tll0810	tll1458	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	0.772
tll0810	tlr1151	tll0810	tlr1151	Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter	Permease protein of oligopeptide ABC transporter	0.963

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About