STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. (475 aa)    
Predicted Functional Partners:
ccmM
Carbon dioxide concentrating mechanism protein; ORF_ID:tll0944.
  
 
 0.999
rbcS
Ribulose bisphosphate carboxylase small subunit; ORF_ID:tll1504.
 
 0.999
tlr1766
ORF_ID:tlr1766; hypothetical protein.
    
 
 0.996
rbcX
RbcX protein; ORF_ID:tll1505; hypothetical protein.
   
 
 0.984
prk
Phosphoribulokinase; ORF_ID:tll1914.
 
  
 0.959
pgk
Phosphoglycerate kinase; ORF_ID:tll2268; Belongs to the phosphoglycerate kinase family.
    
 0.914
tll1470
ORF_ID:tll1470; hypothetical protein.
     
 0.905
tufA
Translation elongation factor EF-Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
      
 0.799
ccmK2
Carbon dioxide concentrating mechanism protein; ORF_ID:tll0947.
     
 0.783
ccmK4
Carbon dioxide concentrating mechanism protein; ORF_ID:tll1596.
     
 0.778
Your Current Organism:
Thermosynechococcus elongatus
NCBI taxonomy Id: 197221
Other names: T. elongatus BP-1, Thermosynechococcus elongatus BP-1, Thermosynechococcus elongatus IAM M-273, Thermosynechococcus elongatus NIES-2133, Thermosynechococcus elongatus str. BP-1, Thermosynechococcus elongatus strain BP-1
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