STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proVGlycine/Betaine L-Proline transport ATP-binding protein; Part of the OusB ABC transporter complex involved in glycine betaine and choline uptake. May also transport several other osmoprotectants such as ectoine, DMSA, DMSP, proline and carnitine. Probably responsible for energy coupling to the transport system. (400 aa)    
Predicted Functional Partners:
proX
Glycine betaine transporter subunit; Part of the OusB ABC transporter complex involved in glycine betaine and choline uptake. Binds glycine betaine.
 
 0.999
proW
Glycine betaine transporter subunit; Part of the OusB ABC transporter complex involved in glycine betaine and choline uptake. May also transport several other osmoprotectants such as ectoine, DMSA, DMSP, proline and carnitine. Probably responsible for the translocation of the substrate across the membrane.
 0.999
mdlA
Predicted ATP-binding component of multidrug ABC transporter; Protein involved in ATPase activity, coupled to transmembrane movement of substances, ATP binding, ATPase activity, nucleotide binding, nucleoside-triphosphatase activity, response to drug and transport.
 
     
0.541
ybhS
Protein involved in (OBSOLETE) ATP-binding cassette (ABC) transporter activity, ATP binding, ATPase activity, coupled to transmembrane movement of substances and transport.
 
      0.501
yafS
Predicted S-adenosyl-L-methionine-dependent methyltransferase; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
      
 0.477
asr
Acid shock protein precursor; Protein involved in DNA binding, response to pH and nucleosome assembly.
      
 0.474
lpxC
UDP-3-O-acyl N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
      
 0.459
ADM99775.1
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.450
ADM99435.1
N-formylglutamate deformylase; Protein involved in amino acid catabolic process.
 
    0.420
ffh
Signal Recognition Particle (SRP) component with 4.5S RNA (ffs); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex [...]
     
 0.412
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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