STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pecMSignal receptor; Involved in pectinase, cellulase, and blue pigment regulation; Belongs to the EamA transporter family. (297 aa)    
Predicted Functional Partners:
pecS
DNA-binding transcriptional regulatory protein PecS; Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM.
 
  
 0.940
ADM98076.1
Transcriptional regulator, MarR family; Protein involved in transcription repressor activity, transcription factor activity, transcription, response to drug and regulation of transcription, DNA-dependent.
 
  
 0.772
eamA
Probable amino acid metabolite efflux pump.
  
   
 0.633
indB
Protein involved in hydrolase activity, phosphoglycolate phosphatase activity, catalytic activity, metabolic process, nonribosomal peptide biosynthetic process and pathogenesis.
   
 
 0.586
ADN00619.1
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.572
indA
Indigoidine biosynthesis protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
 
     0.498
ADN00719.1
Rrf2-linked NADH-flavin reductase; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
 
     0.475
ADM96994.1
Flavin reductase; Protein involved in catalytic activity, coenzyme binding and cellular metabolic process.
 
     0.403
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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