Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFN08004.1 | SFO94555.1 | SAMN04489713_101157 | SAMN04489713_110321 | RNA-binding protein (KH domain); Belongs to the UPF0109 family. | Ribonuclease E. | 0.947 |
| SFN08004.1 | SFQ24126.1 | SAMN04489713_101157 | SAMN04489713_1255 | RNA-binding protein (KH domain); Belongs to the UPF0109 family. | spoIIIJ-associated protein. | 0.991 |
| SFN08004.1 | rph | SAMN04489713_101157 | SAMN04489713_11444 | RNA-binding protein (KH domain); Belongs to the UPF0109 family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.403 |
| SFN61991.1 | SFO68351.1 | SAMN04489713_102605 | SAMN04489713_108346 | SNF2 family N-terminal domain-containing protein. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.782 |
| SFN61991.1 | SFO74576.1 | SAMN04489713_102605 | SAMN04489713_109101 | SNF2 family N-terminal domain-containing protein. | Helicase conserved C-terminal domain-containing protein. | 0.782 |
| SFN61991.1 | SFO94555.1 | SAMN04489713_102605 | SAMN04489713_110321 | SNF2 family N-terminal domain-containing protein. | Ribonuclease E. | 0.893 |
| SFN61991.1 | SFQ25754.1 | SAMN04489713_102605 | SAMN04489713_12571 | SNF2 family N-terminal domain-containing protein. | Superfamily II DNA and RNA helicase. | 0.782 |
| SFN61991.1 | eno | SAMN04489713_102605 | SAMN04489713_103458 | SNF2 family N-terminal domain-containing protein. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.971 |
| SFN61991.1 | pnp | SAMN04489713_102605 | SAMN04489713_101283 | SNF2 family N-terminal domain-containing protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.975 |
| SFN61991.1 | rph | SAMN04489713_102605 | SAMN04489713_11444 | SNF2 family N-terminal domain-containing protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.787 |
| SFO68351.1 | SFN61991.1 | SAMN04489713_108346 | SAMN04489713_102605 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | SNF2 family N-terminal domain-containing protein. | 0.782 |
| SFO68351.1 | SFO94555.1 | SAMN04489713_108346 | SAMN04489713_110321 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease E. | 0.912 |
| SFO68351.1 | eno | SAMN04489713_108346 | SAMN04489713_103458 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.653 |
| SFO68351.1 | pnp | SAMN04489713_108346 | SAMN04489713_101283 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.981 |
| SFO68351.1 | rph | SAMN04489713_108346 | SAMN04489713_11444 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.829 |
| SFO74576.1 | SFN61991.1 | SAMN04489713_109101 | SAMN04489713_102605 | Helicase conserved C-terminal domain-containing protein. | SNF2 family N-terminal domain-containing protein. | 0.782 |
| SFO74576.1 | SFO94555.1 | SAMN04489713_109101 | SAMN04489713_110321 | Helicase conserved C-terminal domain-containing protein. | Ribonuclease E. | 0.912 |
| SFO74576.1 | eno | SAMN04489713_109101 | SAMN04489713_103458 | Helicase conserved C-terminal domain-containing protein. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.653 |
| SFO74576.1 | pnp | SAMN04489713_109101 | SAMN04489713_101283 | Helicase conserved C-terminal domain-containing protein. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.981 |
| SFO74576.1 | rph | SAMN04489713_109101 | SAMN04489713_11444 | Helicase conserved C-terminal domain-containing protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.829 |
page 1 of 4