STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydeQHypothetical fimbrial-like protein ydeQ precursor; Escherichia coli K-12 ortholog: b1502; Escherichia coli O157:H7 ortholog: z2206. (304 aa)    
Predicted Functional Partners:
ydeS
Hypothetical fimbrial-like protein ydeS precursor; Escherichia coli K-12 ortholog: b1504; Escherichia coli O157:H7 ortholog: z2204.
  
  
 0.976
ydeR
Hypothetical fimbrial-like protein ydeR precursor; Escherichia coli K-12 ortholog: b1503; Escherichia coli O157:H7 ortholog: z2205.
  
  
 0.972
c1936
Type-1 fimbrial protein, A chain precursor; Type-1A pilin; Escherichia coli K-12 ortholog: b4314; Escherichia coli O157:H7 ortholog: z2200.
  
  
 0.899
c1934
Outer membrane usher protein fimD precursor; Escherichia coli K-12 ortholog: b4317; Escherichia coli O157:H7 ortholog: z2203.
  
   0.628
c1935
Chaperone protein fimC precursor; Escherichia coli K-12 ortholog: b4316; Escherichia coli O157:H7 ortholog: z2201.
  
   0.544
papC_2
PapC protein; Residues 8 to 839 of 843 are 43.20 pct identical to residues 1 to 842 of 879 from EDL933 : z3600.
   
 
 0.450
ydeP
Hypothetical protein ydeP; Probably involved in acid resistance; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.413
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
Server load: low (26%) [HD]