STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedPHypothetical protein yedP; Escherichia coli K-12 ortholog: b1955; Escherichia coli O157:H7 ortholog: z3045. (271 aa)    
Predicted Functional Partners:
yodD
Hypothetical protein yodD; Escherichia coli K-12 ortholog: b1953; Escherichia coli O157:H7 ortholog: z3043.
  
    0.771
ycjM
Putative sucrose phosphorylase; Escherichia coli K-12 ortholog: b1309; Escherichia coli O157:H7 ortholog: z2475.
 
    0.733
yhaK
Hypothetical protein yhaK; Escherichia coli K-12 ortholog: b3106; Escherichia coli O157:H7 ortholog: z4460; Belongs to the pirin family.
      
 0.683
yegP
Hypothetical protein yegP; Escherichia coli K-12 ortholog: b2080; Escherichia coli O157:H7 ortholog: z3249; Belongs to the UPF0339 family. Duplicated subfamily.
   
    0.666
yfcG
Hypothetical GST-like protein yccG; Escherichia coli K-12 ortholog: b2302; Escherichia coli O157:H7 ortholog: z3564; Belongs to the GST superfamily.
   
    0.560
ygaM
Hypothetical protein ygaM; Escherichia coli K-12 ortholog: b2672; Escherichia coli O157:H7 ortholog: z3972; Belongs to the ElaB/YgaM/YqjD family.
  
    0.560
ybhP
Hypothetical protein ybhP; Escherichia coli K-12 ortholog: b0790; Escherichia coli O157:H7 ortholog: z1009.
   
    0.491
ycgB
Hypothetical protein ycgB; Escherichia coli K-12 ortholog: b1188; Escherichia coli O157:H7 ortholog: z1951.
   
    0.472
elaB
ElaB protein; Escherichia coli K-12 ortholog: b2266; Escherichia coli O157:H7 ortholog: z3526; Belongs to the ElaB/YgaM/YqjD family.
  
    0.456
yjbG
Hypothetical protein yjbG precursor; Escherichia coli K-12 ortholog: b4028; Escherichia coli O157:H7 ortholog: z5626.
  
     0.448
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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