STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. (278 aa)    
Predicted Functional Partners:
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Escherichia coli K-12 ortholog: b2842; Escherichia coli O157:H7 ortholog: z4162.
 
 
 0.999
yaeQ
Hypothetical protein yaeQ; Escherichia coli K-12 ortholog: b0190; Escherichia coli O157:H7 ortholog: z0202.
   
    0.917
c0319
Putative oligogalacturonide lyase; Residues 1 to 386 of 390 are 65.02 pct identical to residues 1 to 386 of 388 from SwissProt.40 : >sp|Q59418|OGL_ERWCA OLIGOGALACTURONIDE LYASE.
     
 0.906
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.898
parC
Topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
    0.894
ybjK
Hypothetical protein ybjK; Escherichia coli K-12 ortholog: b0846; Escherichia coli O157:H7 ortholog: z1073.
   
    0.889
tufA
Elongation factor Tu; EF-Tu; Escherichia coli K-12 ortholog: b3339; Escherichia coli O157:H7 ortholog: z4697.
   
    0.878
tufB
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.874
yciQ
Hypothetical protein yciQ; Escherichia coli K-12 ortholog: b1268.
   
    0.870
ompT
Protease VII precursor; Escherichia coli K-12 ortholog: b0565; Escherichia coli O157:H7 ortholog: z1931.
   
    0.852
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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