STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaGHypothetical protein yiaG; Escherichia coli K-12 ortholog: b3555; Escherichia coli O157:H7 ortholog: z4980. (96 aa)    
Predicted Functional Partners:
ydiZ
Hypothetical protein ydiZ; Escherichia coli K-12 ortholog: b1724; Escherichia coli O157:H7 ortholog: z2753.
   
  
 0.760
elaB
ElaB protein; Escherichia coli K-12 ortholog: b2266; Escherichia coli O157:H7 ortholog: z3526; Belongs to the ElaB/YgaM/YqjD family.
   
    0.695
ycaC
Protein ycaC; Escherichia coli K-12 ortholog: b0897; Escherichia coli O157:H7 ortholog: z1243.
   
    0.672
msyB
Acidic protein msyB; Escherichia coli K-12 ortholog: b1051; Escherichia coli O157:H7 ortholog: z1686.
   
    0.671
ygaU
Unknown protein from 2D-page; Highly specific potassium binding protein that is required for normal growth in the presence of high levels of external K(+). May act as a sensor of cytoplasmic K(+) concentration.
   
    0.661
ygaM
Hypothetical protein ygaM; Escherichia coli K-12 ortholog: b2672; Escherichia coli O157:H7 ortholog: z3972; Belongs to the ElaB/YgaM/YqjD family.
   
  
 0.661
yegP
Hypothetical protein yegP; Escherichia coli K-12 ortholog: b2080; Escherichia coli O157:H7 ortholog: z3249; Belongs to the UPF0339 family. Duplicated subfamily.
   
    0.641
yqjD
Hypothetical protein yqjD; Escherichia coli K-12 ortholog: b3098; Escherichia coli O157:H7 ortholog: z4452; Belongs to the ElaB/YgaM/YqjD family.
   
    0.641
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Dps also protects the cell from UV and gamma irradiation, ir [...]
   
    0.639
yqjC
Protein yqjC precursor; Escherichia coli K-12 ortholog: b3097; Escherichia coli O157:H7 ortholog: z4451.
   
    0.638
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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