STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yidZHypothetical transcriptional regulator yidZ; Involved in anaerobic NO protection. (322 aa)    
Predicted Functional Partners:
yidY
Hypothetical transport protein yidY; Confers resistance to chloramphenicol; Belongs to the major facilitator superfamily. DHA1 family. MdtL (TC 2.A.1.2.22) subfamily.
 
    0.917
iroB
Putative glucosyltransferase; Escherichia coli O157:H7 ortholog: z1190.
  
     0.618
c1575
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1888; Belongs to the lambda phage major capsid protein family.
  
     0.525
c1451
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1888.
  
     0.524
c3523
Conserved hypothetical protein; Escherichia coli O157:H7 ortholog: z4282.
  
     0.518
ygjK
Hypothetical protein ygjK precursor; Escherichia coli K-12 ortholog: b3080; Escherichia coli O157:H7 ortholog: z4433.
  
     0.512
c3168
Putative capsid protein of prophage; Escherichia coli O157:H7 ortholog: z1888.
  
     0.498
yoaF
Hypothetical protein yoaF; Escherichia coli K-12 ortholog: b1793; Escherichia coli O157:H7 ortholog: z2835.
  
     0.497
tnaB
Low affinity tryptophan permease; Escherichia coli K-12 ortholog: b3709; Escherichia coli O157:H7 ortholog: z5204.
       0.491
yieE
Hypothetical protein yieE; Escherichia coli K-12 ortholog: b3712; Escherichia coli O157:H7 ortholog: z5207.
  
    0.486
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.