STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjdCProtein yjdC; Escherichia coli K-12 ortholog: b4135; Escherichia coli O157:H7 ortholog: z5740. (199 aa)    
Predicted Functional Partners:
cutA
Periplasmic divalent cation tolerance protein cutA; Involved in resistance toward heavy metals. Belongs to the CutA family.
     
 0.803
dsbD
Thiol:disulfide interchange protein dsbD precursor; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.
     
 0.776
ybaJ
Hypothetical protein ybaJ; Attenuates Hha toxicity and regulates biofilm formation. Binds to various coding and intergenic regions of genomic DNA (By similarity).
  
     0.762
flgM
Negative regulator of flagellin synthesis; Anti-sigma-28 factor; Escherichia coli K-12 ortholog: b1071; Escherichia coli O157:H7 ortholog: z1709.
  
     0.759
yejG
Hypothetical protein yejG; Escherichia coli K-12 ortholog: b2181; Escherichia coli O157:H7 ortholog: z3440.
  
     0.754
ycfL
Hypothetical protein ycfL; Escherichia coli K-12 ortholog: b1104; Escherichia coli O157:H7 ortholog: z1743.
  
     0.749
ydgK
Hypothetical protein ydgK; Escherichia coli K-12 ortholog: b1626; Escherichia coli O157:H7 ortholog: z2632.
  
     0.744
yhcO
Hypothetical protein yhcO; Escherichia coli K-12 ortholog: b3239; Escherichia coli O157:H7 ortholog: z4598; Belongs to the barstar family.
  
     0.741
wzzE
Lipopolysaccharide biosynthesis protein wzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.728
yhiO
Universal stress protein B; Escherichia coli K-12 ortholog: b3494; Escherichia coli O157:H7 ortholog: z4894.
  
     0.694
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.