Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cthe_0051 | Cthe_0052 | Cthe_0051 | Cthe_0052 | KEGG: cce:Ccel_2402 hypothetical protein. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.475 |
Cthe_0051 | Cthe_0175 | Cthe_0051 | Cthe_0175 | KEGG: cce:Ccel_2402 hypothetical protein. | PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase. | 0.813 |
Cthe_0052 | Cthe_0051 | Cthe_0052 | Cthe_0051 | KEGG: cce:Ccel_2402 hypothetical protein. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.475 |
Cthe_0052 | Cthe_0053 | Cthe_0052 | Cthe_0053 | KEGG: cce:Ccel_2402 hypothetical protein. | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.429 |
Cthe_0052 | Cthe_0175 | Cthe_0052 | Cthe_0175 | KEGG: cce:Ccel_2402 hypothetical protein. | PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase. | 0.814 |
Cthe_0052 | gatB-2 | Cthe_0052 | Cthe_1540 | KEGG: cce:Ccel_2402 hypothetical protein. | glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.400 |
Cthe_0052 | pgi | Cthe_0052 | Cthe_0217 | KEGG: cce:Ccel_2402 hypothetical protein. | KEGG: cce:Ccel_1445 phosphoglucose isomerase (PGI); PFAM: phosphoglucose isomerase (PGI); Belongs to the GPI family. | 0.429 |
Cthe_0053 | Cthe_0052 | Cthe_0053 | Cthe_0052 | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.429 |
Cthe_0175 | Cthe_0051 | Cthe_0175 | Cthe_0051 | PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.813 |
Cthe_0175 | Cthe_0052 | Cthe_0175 | Cthe_0052 | PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.814 |
gatB-2 | Cthe_0052 | Cthe_1540 | Cthe_0052 | glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.400 |
pgi | Cthe_0052 | Cthe_0217 | Cthe_0052 | KEGG: cce:Ccel_1445 phosphoglucose isomerase (PGI); PFAM: phosphoglucose isomerase (PGI); Belongs to the GPI family. | KEGG: cce:Ccel_2402 hypothetical protein. | 0.429 |