STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_0175PFAM: polysaccharide deacetylase; KEGG: cce:Ccel_1341 polysaccharide deacetylase. (378 aa)    
Predicted Functional Partners:
Cthe_0052
KEGG: cce:Ccel_2402 hypothetical protein.
    0.814
Cthe_0051
KEGG: cce:Ccel_2402 hypothetical protein.
     0.813
Cthe_0793
KEGG: cce:Ccel_0595 hypothetical protein.
  
    0.651
Cthe_2695
KEGG: cce:Ccel_2928 hypothetical protein.
  
    0.602
Cthe_0760
KEGG: cce:Ccel_0718 hypothetical protein.
  
    0.580
Cthe_1932
PFAM: S-layer domain-containing protein; KEGG: cce:Ccel_0288 hypothetical protein.
  
     0.576
Cthe_2216
PFAM: FlgN family protein; KEGG: cce:Ccel_0107 FlgN family protein.
  
    0.570
Cthe_0320
KEGG: amt:Amet_0486 hypothetical protein.
  
     0.563
Cthe_2341
PFAM: glycosyl transferase family 2; KEGG: apr:Apre_0245 glycosyl transferase family 2.
  
  
 0.517
Cthe_1788
PFAM: glycosyl transferase family 2; KEGG: cce:Ccel_0333 glycosyl transferase family 2.
  
  
 0.507
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.