STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cthe_1512Type II site-specific deoxyribonuclease; Recognizes the double-stranded unmethylated sequence GATC and cleaves before G-1; Belongs to the type II restriction enzyme DpnII family. (310 aa)    
Predicted Functional Partners:
Cthe_1513
KEGG: chy:CHY_2213 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase.
    0.993
Cthe_1511
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: chy:CHY_2212 putative DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.964
Cthe_2470
DNA adenine methylase; KEGG: ctc:CTC00387 putative adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase.
    0.950
Cthe_0514
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: afl:Aflv_1174 adenine specific DNA methylase Mod; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.589
Cthe_1510
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_1961 short-chain dehydrogenase/reductase SDR.
  
  
 0.584
Cthe_0746
PFAM: Peptidase S7 flavivirus helicase (NS3); KEGG: amr:AM1_5342 hypothetical protein.
   
   0.447
Cthe_3128
KEGG: hypothetical protein.
   
    0.400
Your Current Organism:
Hungateiclostridium thermocellum
NCBI taxonomy Id: 203119
Other names: Clostridium thermocellum ATCC 27405, H. thermocellum ATCC 27405, Hungateiclostridium thermocellum ATCC 27405, Ruminiclostridium thermocellum ATCC 27405
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