Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cthe_0135 | Cthe_3126 | Cthe_0135 | Cthe_3126 | PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase. | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | 0.464 |
Cthe_2777 | Cthe_3126 | Cthe_2777 | Cthe_3126 | KEGG: bhy:BHWA1_02422 nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC. | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | 0.427 |
Cthe_3125 | Cthe_3126 | Cthe_3125 | Cthe_3126 | PFAM: heat shock protein Hsp20; KEGG: heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family. | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | 0.436 |
Cthe_3126 | Cthe_0135 | Cthe_3126 | Cthe_0135 | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | PFAM: Acyl transferase; Beta-ketoacyl synthase; phosphopantetheine-binding; KR domain protein; KEGG: sus:Acid_3077 beta-ketoacyl synthase. | 0.464 |
Cthe_3126 | Cthe_2777 | Cthe_3126 | Cthe_2777 | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | KEGG: bhy:BHWA1_02422 nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC. | 0.427 |
Cthe_3126 | Cthe_3125 | Cthe_3126 | Cthe_3125 | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | PFAM: heat shock protein Hsp20; KEGG: heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family. | 0.436 |
Cthe_3126 | Cthe_3127 | Cthe_3126 | Cthe_3127 | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | PFAM: peptidase M56 BlaR1; KEGG: ckr:CKR_3089 hypothetical protein. | 0.683 |
Cthe_3126 | kptA | Cthe_3126 | Cthe_3059 | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | Phosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.600 |
Cthe_3127 | Cthe_3126 | Cthe_3127 | Cthe_3126 | PFAM: peptidase M56 BlaR1; KEGG: ckr:CKR_3089 hypothetical protein. | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | 0.683 |
kptA | Cthe_3126 | Cthe_3059 | Cthe_3126 | Phosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_15250 hypothetical protein. | 0.600 |