Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_2653 | Sde_2654 | Sde_2653 | Sde_2654 | Hypothetical protein. | Hypothetical protein. | 0.863 |
Sde_2653 | Sde_2801 | Sde_2653 | Sde_2801 | Hypothetical protein. | VCBS domain protein. | 0.616 |
Sde_2653 | Sde_2991 | Sde_2653 | Sde_2991 | Hypothetical protein. | TonB-dependent receptor. | 0.455 |
Sde_2653 | aga16B | Sde_2653 | Sde_1175 | Hypothetical protein. | B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication). | 0.705 |
Sde_2653 | aga86E | Sde_2653 | Sde_2655 | Hypothetical protein. | B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. | 0.755 |
Sde_2653 | ply6F | Sde_2653 | Sde_0034 | Hypothetical protein. | Polysaccharide lyase-like protein. | 0.740 |
Sde_2653 | ply7E | Sde_2653 | Sde_2839 | Hypothetical protein. | Putative polysaccharide lyase. | 0.627 |
Sde_2653 | ply7F | Sde_2653 | Sde_3286 | Hypothetical protein. | Putative polysaccharide lyase. | 0.611 |
Sde_2654 | Sde_2653 | Sde_2654 | Sde_2653 | Hypothetical protein. | Hypothetical protein. | 0.863 |
Sde_2654 | Sde_2801 | Sde_2654 | Sde_2801 | Hypothetical protein. | VCBS domain protein. | 0.590 |
Sde_2654 | Sde_2991 | Sde_2654 | Sde_2991 | Hypothetical protein. | TonB-dependent receptor. | 0.593 |
Sde_2654 | aga16B | Sde_2654 | Sde_1175 | Hypothetical protein. | B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. In Press (Scheduled for June publication). | 0.756 |
Sde_2654 | aga86E | Sde_2654 | Sde_2655 | Hypothetical protein. | B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. | 0.720 |
Sde_2654 | ply6F | Sde_2654 | Sde_0034 | Hypothetical protein. | Polysaccharide lyase-like protein. | 0.747 |
Sde_2654 | ply7E | Sde_2654 | Sde_2839 | Hypothetical protein. | Putative polysaccharide lyase. | 0.607 |
Sde_2654 | ply7F | Sde_2654 | Sde_3286 | Hypothetical protein. | Putative polysaccharide lyase. | 0.657 |
Sde_2801 | Sde_2653 | Sde_2801 | Sde_2653 | VCBS domain protein. | Hypothetical protein. | 0.616 |
Sde_2801 | Sde_2654 | Sde_2801 | Sde_2654 | VCBS domain protein. | Hypothetical protein. | 0.590 |
Sde_2801 | Sde_2991 | Sde_2801 | Sde_2991 | VCBS domain protein. | TonB-dependent receptor. | 0.641 |
Sde_2801 | aga86E | Sde_2801 | Sde_2655 | VCBS domain protein. | B-agarase; Reference: Ekborg, et al. 2006. Genomic and proteomic analysis of the agarolytic system expressed by Saccharophagus degradans 2-40. Applied and Environmental Microbiology. | 0.654 |
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