STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0392Diguanylate cyclase. (319 aa)    
Predicted Functional Partners:
Sde_3923
EAL domain protein.
 
    0.957
Sde_1392
GAF domain protein.
 
 
 0.906
Sde_2977
Response regulator receiver.
 
 
    0.902
Sde_1233
Metal-dependent phosphohydrolase, HD subdomain.
 
   0.895
Sde_0670
Metal dependent phosphohydrolase.
 
   0.881
Sde_0393
CheC, inhibitor of MCP methylation.
 
     0.862
Sde_3032
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 0.807
Sde_3633
Response regulator receiver.
 
 
    0.776
Sde_1240
Diguanylate cyclase/phosphodiesterase.
 
   0.775
Sde_3311
EAL domain protein.
 
 0.736
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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