STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_0867Transferase hexapeptide repeat. (179 aa)    
Predicted Functional Partners:
Sde_2122
CheW protein.
 
     0.777
Sde_2350
Transferase hexapeptide repeat.
  
     0.774
Sde_0869
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.730
Sde_0868
B-glycosyltransferase-like protein.
  
    0.658
Sde_0870
Hypothetical protein.
       0.609
Sde_0871
Oxidoreductase, Gfo/Idh/MocA family/transferase hexapeptide repeat protein.
 
     0.557
Sde_3725
Amino acid adenylation.
  
  
 0.553
Sde_0866
Hypothetical protein.
       0.483
Sde_0872
Oxidoreductase-like protein.
  
  
 0.446
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.