STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_1215Hypothetical protein. (993 aa)    
Predicted Functional Partners:
Sde_1315
Hypothetical protein.
  
     0.763
Sde_3572
General secretion pathway L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.750
Sde_2261
Hypothetical protein.
  
     0.749
Sde_1773
Hypothetical protein.
  
     0.745
Sde_3807
Conserved hypothetical protein.
  
    0.744
Sde_2959
TPR repeat.
 
     0.711
Sde_0359
Response regulator receiver.
  
     0.705
Sde_2019
Conserved hypothetical protein.
  
     0.704
Sde_1144
Conserved hypothetical protein.
  
     0.692
Sde_2960
Tetratricopeptide TPR_2.
  
     0.680
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.