STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmfRibosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family. (68 aa)    
Predicted Functional Partners:
Sde_0532
SSU ribosomal protein S30P / sigma 54 modulation protein.
  
 
 0.840
Sde_1599
Putative sigma 54 modulation protein/ribosomal protein S30EA.
   
 
 0.812
Sde_0576
Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
   
    0.777
Sde_0371
Histidine kinase.
  
     0.760
Sde_1545
YaeQ.
   
    0.712
Sde_1736
Protein of unknown function DUF1315.
  
     0.580
Sde_1895
tRNA--hydroxylase.
  
     0.567
Sde_1894
Protein of unknown function DUF1289.
  
     0.542
Sde_2588
Outer membrane chaperone Skp (OmpH).
  
     0.542
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
    0.527
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.