STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_1755Hypothetical protein. (975 aa)    
Predicted Functional Partners:
agu67A
Putative a-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.883
xyn10C
Putative xylanase.
     0.876
arb43I
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
     0.821
arb43H
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
     0.802
Sde_2492
Glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
  
 
   0.793
ces12A
Transcriptional regulator, GntR family.
 
 
   0.779
xyn10B
Putative xylanase.
 
   0.770
arb43G
Putative bifunctional xylanase/a-L-arabinofuranosidase.
 
 
 0.764
arb43K
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.761
xyn10A
Putative xylanase.
  
     0.739
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.