Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_0335 | Sde_2903 | Sde_0335 | Sde_2903 | PAAR. | Sel1. | 0.756 |
Sde_0335 | ftsK | Sde_0335 | Sde_1693 | PAAR. | DNA translocase FtsK; Belongs to the FtsK/SpoIIIE family. | 0.751 |
Sde_0335 | rnt | Sde_0335 | Sde_2429 | PAAR. | RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.756 |
Sde_0335 | ruvC | Sde_0335 | Sde_2535 | PAAR. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.756 |
Sde_1043 | Sde_2903 | Sde_1043 | Sde_2903 | PAAR. | Sel1. | 0.758 |
Sde_1043 | Sde_3775 | Sde_1043 | Sde_3775 | PAAR. | PAAR. | 0.774 |
Sde_1043 | ftsK | Sde_1043 | Sde_1693 | PAAR. | DNA translocase FtsK; Belongs to the FtsK/SpoIIIE family. | 0.751 |
Sde_1043 | rnt | Sde_1043 | Sde_2429 | PAAR. | RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.756 |
Sde_1043 | ruvC | Sde_1043 | Sde_2535 | PAAR. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.756 |
Sde_1551 | aspS | Sde_1551 | Sde_0913 | Transcriptional regulator, MerR family. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.814 |
Sde_1551 | ruvA | Sde_1551 | Sde_2534 | Transcriptional regulator, MerR family. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.647 |
Sde_1551 | ruvC | Sde_1551 | Sde_2535 | Transcriptional regulator, MerR family. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.678 |
Sde_2903 | Sde_0335 | Sde_2903 | Sde_0335 | Sel1. | PAAR. | 0.756 |
Sde_2903 | Sde_1043 | Sde_2903 | Sde_1043 | Sel1. | PAAR. | 0.758 |
Sde_2903 | Sde_3775 | Sde_2903 | Sde_3775 | Sel1. | PAAR. | 0.758 |
Sde_2903 | ftsK | Sde_2903 | Sde_1693 | Sel1. | DNA translocase FtsK; Belongs to the FtsK/SpoIIIE family. | 0.650 |
Sde_2903 | rnt | Sde_2903 | Sde_2429 | Sel1. | RNAse T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.756 |
Sde_2903 | ruvC | Sde_2903 | Sde_2535 | Sel1. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.754 |
Sde_3775 | Sde_1043 | Sde_3775 | Sde_1043 | PAAR. | PAAR. | 0.774 |
Sde_3775 | Sde_2903 | Sde_3775 | Sde_2903 | PAAR. | Sel1. | 0.758 |
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