STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn10BPutative xylanase. (619 aa)    
Predicted Functional Partners:
agu67A
Putative a-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.805
xyn11A
Putative xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.770
Sde_1755
Hypothetical protein.
 
   0.770
arb43K
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
 0.757
arg53B
Endo-1,4-b-galactanase-like protein.
     0.752
ces3A
Acetyl xylan esterase-like protein.
 
 0.737
cel5B
Endoglucanase-like protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.725
cel9A
Putative endoglucanase.
     0.717
arb43I
Putative b-xylosidase/a-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
 0.702
arg53A
Putative endo-1,4-b-galactanase.
     0.693
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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