STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sde_2938Putative amylase. (563 aa)    
Predicted Functional Partners:
pul13A
Putative pullulanase; Belongs to the glycosyl hydrolase 13 family.
 
 0.991
Sde_0563
Putative a-amylase.
 
   
  0.987
cel6A
Putative cellobiohydrolase, non-reducing end; Belongs to the glycosyl hydrolase family 6.
  
   
 0.929
Sde_0988
Putative isoamylase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.925
glgB
Putative 1,4-a-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.920
Sde_0573
Putative a-amylase.
  
  
  0.917
Sde_0989
Putative a-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.917
Sde_0986
4-a-glucanotransferase-like protein.
  
 
 0.911
Sde_0600
Putative glucoamylase or glucodextranase.
    
 0.903
Sde_0589
Putative retaining a-glycosidase; Amylase-related.
     
  0.900
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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