STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1233PFAM: GAF; SMART: Metal-dependent phosphohydrolase, HD region; KEGG: tel:tlr0485 hypothetical protein. (544 aa)    
Predicted Functional Partners:
Tery_1865
PFAM: beta-lactamase-like; KEGG: ava:Ava_2117 beta-lactamase-like.
 
     0.721
Tery_1986
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase CHASE2; KEGG: tel:tll2280 adenylate cyclase.
 
     0.721
Tery_2417
KEGG: ana:all0661 adenylate cyclase; TIGRFAM: PAS sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
  
 0.713
Tery_4637
PFAM: beta-lactamase-like; KEGG: ana:alr4847 hypothetical protein.
 
     0.694
Tery_2865
KEGG: ava:Ava_2117 beta-lactamase-like.
 
     0.653
Tery_4980
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:all0219 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL response regulator receiveR PAS fold-3 PAS fold; SMART: PAS.
 
 
 0.619
Tery_0665
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: ana:alr3170 hypothetical protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.585
Tery_4447
Multi-sensor hybrid histidine kinase; KEGG: ana:all2875 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold; SMART: PAS PAC motif.
 
  
 0.563
Tery_2499
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: ana:all4897 hypothetical protein.
 
 
 0.558
Tery_0943
KEGG: ava:Ava_1029 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiveR ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
   
 0.533
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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