STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_1917PFAM: von Willebrand factor, type A; KEGG: ava:Ava_B0132 serine/threonine protein kinase with WD40 repeats. (1204 aa)    
Predicted Functional Partners:
Tery_2367
KEGG: ava:Ava_1104 hypothetical protein.
 
  
 0.840
Tery_1916
Hypothetical protein.
       0.757
Tery_1918
PFAM: GUN4-like; KEGG: ana:alr4949 serine/threonine kinase.
       0.732
Tery_1915
PFAM: macrophage migration inhibitory factor; KEGG: syf:Synpcc7942_2599 hypothetical protein.
 
     0.608
Tery_1531
Hypothetical protein; KEGG: saa:SAUSA300_0772 clumping factor A.
  
     0.479
Tery_3509
KEGG: sha:SH2426 hypothetical protein.
 
  
 0.463
Tery_3336
Protein serine/threonine phosphatases; PFAM: protein phosphatase 2C-like; KEGG: ava:Ava_A0002 protein serine/threonine phosphatase.
  
  
 0.405
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.