STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_2828Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains-like; KEGG: ana:alr2824 hypothetical protein. (709 aa)    
Predicted Functional Partners:
Tery_2368
PFAM: von Willebrand factor, type A; KEGG: ava:Ava_1103 von Willebrand factor, type A.
 
    0.789
Tery_2367
KEGG: ava:Ava_1104 hypothetical protein.
 
   
 0.788
Tery_1531
Hypothetical protein; KEGG: saa:SAUSA300_0772 clumping factor A.
  
     0.764
Tery_2377
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: gvi:gll2495 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.690
Tery_4221
PFAM: ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: mac:MA1270 sensory transduction histidine kinase.
      
 0.690
Tery_4515
PFAM: S-layer-like region Carbohydrate-selective porin OprB; KEGG: ava:Ava_4059 S-layer region-like; Belongs to the OprB family.
      
 0.690
Tery_1341
KEGG: mlo:mlr7554 hypothetical protein.
  
     0.627
Tery_0345
KEGG: ava:Ava_3131 hypothetical protein.
  
     0.587
Tery_0595
KEGG: ava:Ava_0514 hypothetical protein.
  
     0.580
Tery_1507
KEGG: ava:Ava_0551 hypothetical protein.
  
     0.539
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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