STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3208Conserved hypothetical protein; KEGG: ana:alr3583 unknown protein. (230 aa)    
Predicted Functional Partners:
Tery_4371
KEGG: ava:Ava_4934 predicted transmembrane transcriptional regulator (anti-sigma factor).
 
 
 0.863
Tery_3403
KEGG: ava:Ava_1851 hypothetical protein.
  
     0.769
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.763
Tery_3155
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase response regulator receiveR GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ana:all4963 adenylate cyclase carring two-component hybrid sensor and regulator domains.
  
   
 0.757
Tery_1839
KEGG: ava:Ava_4619 hypothetical protein.
  
     0.739
Tery_4817
PFAM: response regulator receiveR GAF Stage II sporulation E; SMART: Protein phosphatase 2C-like; KEGG: ana:all1703 two-component response regulator.
  
  
 0.739
Tery_0929
PFAM: PBS lyase HEAT-like repeat; KEGG: ava:Ava_2039 hypothetical protein.
  
     0.733
Tery_4219
KEGG: ava:Ava_3525 heterocyst differentiation protein.
  
    0.723
Tery_4228
PFAM: MCP methyltransferase, CheR-type; KEGG: rpa:RPA1631 chemotaxis methyltransferase, CheR2.
    
   0.722
Tery_2317
KEGG: ava:Ava_4162 hypothetical protein.
  
     0.719
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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