STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_3667KEGG: xcb:XC_0063 regulatory protein CII. (356 aa)    
Predicted Functional Partners:
Tery_3666
Hypothetical protein.
       0.791
Tery_4230
Chromosome segregation ATPase; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: sth:STH3333 ParA, ParA family ATPase.
  
     0.728
Tery_3640
PFAM: ParB-like nuclease; KEGG: ana:alr5348 unknown protein.
  
 
 0.721
Tery_3638
KEGG: gvi:glr3351 ParB family chromosome partitioning protein.
 
 
 0.649
Tery_3713
Hypothetical protein; KEGG: sco:SCO2188 putative peptidase (putative secreted protein).
  
     0.595
Tery_2045
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand; KEGG: syf:Synpcc7942_0131 cyclic nucleotide-binding domain (cNMP-BD) protein.
  
     0.541
Tery_3668
PFAM: pentapeptide repeat; KEGG: ana:alr9014 unknown protein.
 
     0.529
Tery_0144
KEGG: ava:Ava_4703 hypothetical protein.
  
 
 0.527
Tery_0149
PFAM: Rho termination factor-like.
  
 
 0.527
Tery_2153
KEGG: ath:At3g25805 expressed protein.
  
     0.475
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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