STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4781PFAM: protein kinase TPR repeat Tetratricopeptide TPR_2; SMART: Serine/threonine protein kinase Tetratricopeptide region; KEGG: cyb:CYB_1515 tetratricopeptide repeat/protein kinase domain protein. (738 aa)    
Predicted Functional Partners:
Tery_0088
PFAM: Forkhead-associated protein kinase; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: ana:alr4954 serine/threonine kinase.
 
 
 0.864
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.774
Tery_3751
PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pmn:PMN2A_1093 TPR repeat.
  
    0.769
Tery_1251
Methyltransferase FkbM family; KEGG: pmn:PMN2A_1093 TPR repeat; TIGRFAM: methyltransferase FkbM family; PFAM: TPR repeat Tetratricopeptide TPR_3 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
 
     0.766
Tery_3754
KEGG: ava:Ava_1043 methyltransferase FkbM; TIGRFAM: methyltransferase FkbM family; PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region.
  
    0.747
Tery_2509
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_4803 tetratricopeptide TPR_3.
 
    0.738
Tery_2857
PFAM: protein kinase adenylyl cyclase class-3/4/guanylyl cyclase GAF; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: ana:alr2258 serine/threonine kinase with two-component sensor domain.
  
 
 0.736
Tery_0023
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: pmt:PMT1811 TPR repeat:HAT (Half-A-TPR) repeat.
  
     0.726
Tery_3863
PFAM: protein kinase GAF; SMART: Tyrosine protein kinase Serine/threonine protein kinase; KEGG: ava:Ava_0083 serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF sensor.
  
  
 0.693
Tery_3869
PFAM: WD-40 repeat peptidase C14, caspase catalytic subunit p20; KEGG: mba:Mbar_A2862 WD40-repeat containing protein.
  
 0.686
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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