STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4913KEGG: ava:Ava_0153 serine/threonine protein kinase. (101 aa)    
Predicted Functional Partners:
Tery_3569
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ava:Ava_3507 protein prenyltransferase, alpha subunit.
 
      0.872
Tery_4912
KEGG: ava:Ava_2084 serine/threonine protein kinase.
 
     0.850
Tery_4114
PFAM: Mo-dependent nitrogenase-like; KEGG: ava:Ava_1587 Mo-dependent nitrogenase-like.
  
     0.739
Tery_0672
KEGG: ana:alr4308 hypothetical protein.
  
     0.727
Tery_1193
KEGG: ava:Ava_1259 hypothetical protein.
  
     0.721
Tery_4487
TIGRFAM: conserved hypothetical protein; KEGG: ava:Ava_3680 hypothetical protein.
  
     0.704
Tery_1762
KEGG: ana:alr3524 hypothetical protein.
  
     0.684
Tery_0206
KEGG: ava:Ava_2889 hypothetical protein.
  
     0.658
Tery_3196
KEGG: ava:Ava_4227 hypothetical protein.
  
     0.652
Tery_0347
TIGRFAM: CO2 hydration protein; KEGG: ana:alr0871 hypothetical protein.
  
     0.649
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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