STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tery_4976PFAM: amine oxidase FAD dependent oxidoreductase; KEGG: ava:Ava_0871 amine oxidase. (515 aa)    
Predicted Functional Partners:
Tery_4010
PFAM: Squalene/phytoene synthase; KEGG: syn:slr1255 phytoene synthase.
 
  
 0.721
Tery_1756
KEGG: ava:Ava_3374 hypothetical protein.
  
     0.618
Tery_0876
TIGRFAM: bacteriochlorophyll/chlorophyll synthetase chlorophyll synthase, ChlG; PFAM: UbiA prenyltransferase; KEGG: ana:all4480 chlorophyll synthase 33 kD subunit.
 
  
 0.613
Tery_4967
Protoporphyrin IX magnesium-chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.600
Tery_1823
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; KEGG: ava:Ava_1497 geranylgeranyl reductase.
 
  
 0.559
Tery_3886
KEGG: ava:Ava_2074 hypothetical protein.
  
    0.555
Tery_2153
KEGG: ath:At3g25805 expressed protein.
  
     0.551
Tery_4469
KEGG: ava:Ava_3899 Mg-protoporphyrin IX methyl transferase; TIGRFAM: magnesium protoporphyrin O-methyltransferase; PFAM: Magnesium-protoporphyrin IX methyltransferase-like Methyltransferase type 11 Methyltransferase type 12.
  
  
 0.536
Tery_4630
PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: ava:Ava_2101 3-beta hydroxysteroid dehydrogenase/isomerase.
  
     0.522
Tery_3224
Hydrogenobyrinic acid a,c-diamide cobaltochelatase; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase; KEGG: ana:all4365 protoporphyrin IX magnesium chelatase.
  
  
 0.508
Your Current Organism:
Trichodesmium erythraeum
NCBI taxonomy Id: 203124
Other names: T. erythraeum IMS101, Trichodesmium erythraeum IMS101, Trichodesmium erythraeum str. IMS101, Trichodesmium erythraeum strain IMS101, Trichodesmium sp. IMS101
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