STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspCAspartate aminotransferase; COG category=E. (406 aa)    
Predicted Functional Partners:
pheA
Prephenate dehydratase; COG category=E.
    
 0.967
tyrA
Chorismate mutase/prephenate dehydrogenase; COG category=E.
    
 0.966
hisC
Histidinol-phosphate aminotransferase; COG category=E; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.944
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
   
 0.915
cysK
Cysteine synthase A; COG category=E; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 0.914
metC
Beta-cystathionase; COG category=E.
   
 
 0.906
thrA
Aspartokinase I/homoserine dehydrogenase I; COG category=E; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.885
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.859
sdhA
Succinate dehydrogenase flavoprotein subunit; COG category=C; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.850
sdhB
Succinate dehydrogenase iron-sulfur protein; COG category=C.
   
 0.850
Your Current Organism:
Blochmannia floridanus
NCBI taxonomy Id: 203907
Other names: C. Blochmannia floridanus, Candidatus Blochmannia floridanus
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