STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_01450VanY domain-containing protein. (113 aa)    
Predicted Functional Partners:
C824_01449
Regulatory protein vanR.
       0.773
C824_01981
Glycosyl transferase.
     
 0.689
C824_04028
Uncharacterized protein.
     
 0.689
C824_02200
Uncharacterized protein; Belongs to the peptidase S11 family.
     
 0.658
C824_03342
Uncharacterized protein.
     
 0.588
C824_03343
Uncharacterized protein.
     
 0.588
C824_01447
DDE_Tnp_IS66_C domain-containing protein.
       0.558
C824_01448
Phage_integrase domain-containing protein.
       0.558
C824_03339
Cell division protein FtsW; Belongs to the SEDS family.
     
  0.499
C824_03349
Uncharacterized protein; Belongs to the SEDS family.
     
  0.499
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.