STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_02339DUF4364 family protein. (170 aa)    
Predicted Functional Partners:
C824_02338
TIGR01212 family radical SAM protein.
       0.835
C824_04022
Single-stranded DNA-binding protein.
 
     0.807
C824_01182
DnaD domain-containing protein.
  
     0.767
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.713
C824_01181
AAA domain-containing protein.
  
     0.701
C824_05660
DNA polymerase III, delta' subunit.
  
    0.695
C824_02365
SEC-C domain-containing protein.
  
     0.618
C824_01751
Small, acid-soluble spore protein, alpha/beta type.
  
     0.604
C824_02250
Uncharacterized protein.
  
     0.596
C824_04214
Uncharacterized protein.
  
     0.588
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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