STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBType IV fimbrial assembly, ATPase PilB. (579 aa)    
Predicted Functional Partners:
pilC
Type IV fimbrial assembly protein PilC.
 
 0.998
AIY19834.2
Hypothetical protein.
 
 
 0.966
AIY16965.1
Hypothetical protein.
  
 
 0.946
pilD
Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.929
pilT
Twitching motility protein PilT.
 
  
0.896
AIY16966.1
Hypothetical protein.
  
 
 0.892
AIY18131.2
ComEC/Rec2-related protein.
  
  
 0.740
AIY17707.1
Leader peptidase (Prepilin peptidase).
 
 
 0.644
AJR18550.1
Competence protein.
  
  
 0.608
AJR18568.1
Rossmann fold nucleotide-binding protein Smf; Possibly involved in DNA uptake.
  
  
 0.571
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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