STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18374.1Hypothetical protein. (268 aa)    
Predicted Functional Partners:
AIY16437.1
Protein RtcB.
 
    0.718
AIY17292.2
Aconitate hydratase.
       0.543
AIY17293.1
Hypothetical protein.
       0.536
AIY17294.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.536
AIY17295.1
Hypothetical protein.
       0.536
AIY17820.1
Putative Nudix-like regulator; Belongs to the Nudix hydrolase family.
 
     0.459
AIY16938.1
Protein serine-threonine phosphatase.
 
     0.409
AIY18347.1
Tellurite resistance protein; Belongs to the TelA family.
  
     0.403
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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