STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY19935.25-aminopentanamidase. (275 aa)    
Predicted Functional Partners:
AIY17584.1
Lysine 2-monooxygenase.
 
 
 0.993
gabT
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.938
AIY17585.1
ABC-type multidrug transport system, ATPase component.
  
  
 0.712
AIY17586.1
ABC-type multidrug transport system, permease component.
  
    0.702
AIY19936.2
Cytochrome oxidase assembly protein.
       0.698
AIY17582.1
Putative amino acid transporter.
 
   
 0.602
AIY18963.1
Putative hydrolase.
  
     0.597
AIY17583.1
Transcriptional regulator, AsnC family.
 
     0.587
AJR18438.1
Aliphatic amidase amiE.
  
     0.563
speB_1
Agmatinase; Belongs to the arginase family.
  
 0.459
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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