STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY17974.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
AIY16736.1
SdrA.
 
     0.729
AIY15796.1
Putative transferase; Belongs to the methyltransferase superfamily.
  
     0.652
AIY18302.2
Hypothetical protein.
  
     0.652
AIY18747.1
Uncharacterized protein Q1 colocalized with Q.
  
     0.638
AIY18118.1
Hypothetical protein.
  
     0.543
AIY17975.1
Ferrichrome ABC transporter.
       0.527
AIY17976.1
ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.527
AIY19988.2
ABC-type Fe3+-siderophore transport system, permease 2 component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.527
AIY17977.1
ABC-type Fe3+-siderophore transport system, ATPase component.
       0.527
AIY19870.1
Putative membrane protein.
  
     0.511
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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