STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18865.1Vitamin B12 ABC transporter, B12-binding component BtuF. (315 aa)    
Predicted Functional Partners:
AIY19565.1
ABC-type Fe3+-siderophore transport system, ATPase component.
 
 
 0.854
AJR18866.1
ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.789
AIY19564.1
Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.789
AIY17977.1
ABC-type Fe3+-siderophore transport system, ATPase component.
 
 
 0.696
fepC_2
ABC-type Fe3+-siderophore transport system, ATPase component.
 
 
 0.695
fepC_1
ABC-type Fe3+-siderophore transport system, ATPase component.
 
 
 0.687
AIY17952.1
Putative iron-siderophore ABC-transporter ATP-binding protein.
 
 
 0.678
AIY19985.2
ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.607
AIY19553.2
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
 
 
 0.601
AIY17976.1
ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.598
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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