STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABF42980.1Serine/threonine protein kinase with TPR repeats. (1023 aa)    
Predicted Functional Partners:
ABF43330.1
Protein serine/threonine phosphatase.
 
 0.860
ABF43329.1
FHA domain containing protein.
 
 
 0.800
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.587
ABF41719.1
Serine phosphatase.
 
 
 0.555
ABF41579.1
Serine/threonine protein kinase.
 
  
0.532
ABF42979.1
Hypothetical protein.
       0.531
ABF39470.1
Beta-ketoacyl synthase.
  
 
 0.527
ABF40803.1
Adenylate/guanylate cyclase.
 
 
 0.478
ABF43059.1
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.477
ABF42504.1
Multi-sensor signal transduction histidine kinase.
  
  
 0.462
Your Current Organism:
Koribacter versatilis
NCBI taxonomy Id: 204669
Other names: Acidobacteria bacterium Ellin345, C. Koribacter versatilis Ellin345, Candidatus Koribacter versatilis Ellin345, Koribacter versatilis Ellin345, bacterium Ellin345
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