STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEAR1543Hypothetical protein, putative phosphoesterase; No homology to any previously reported sequences. (312 aa)    
Predicted Functional Partners:
lspA3
Lipoprotein signal peptidase (Prolipoprotein signal peptidase) (Signal peptidase II) (SPase II); This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      0.813
cadA2
Cadmium-transporting ATPase; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.808
fadD
Long-chain-fatty-acid--CoA ligase (Long-chain acyl-CoA synthetase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.710
HEAR2603
Hypothetical protein; No homology to any previously reported sequences.
    
 0.710
rplF
50S ribosomal subunit protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.710
cadR2
Cd(II)/Pb(II)-responsive transcriptional regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.552
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.487
HEAR1546
Putative cytochrome c, class I:Iron permease FTR1 precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.472
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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