STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEAR2999Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase) transmembrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase S11 family. (382 aa)    
Predicted Functional Partners:
HEAR0634
Putative Serine-type D-Ala-D-Ala carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.915
HEAR1716
Conserved hypothetical protein, putative D-alanyl-D-alanine carboxypeptidase; Homologs of previously reported genes of unknown function.
     
 0.910
mrcA1
Penicillin-binding protein 1A (PBP-1a) (PBP1a); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.906
mrcA2
Penicillin-binding protein 1A (PBP-1a) (PBP1a); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.906
HEAR2998
Conserved hypothetical protein, putative alpha/beta-hydrolase; Homologs of previously reported genes of unknown function.
 
     0.684
HEAR2997
Putative ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.543
HEAR3000
D-amino-acid transaminase; Function of strongly homologous gene; enzyme.
       0.532
secB
Protein export chaperone SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.500
HEAR3001
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0250 family.
  
    0.495
HEAR2996
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.484
Your Current Organism:
Herminiimonas arsenicoxydans
NCBI taxonomy Id: 204773
Other names: CCM 7303, DSM 17148, H. arsenicoxydans, Herminiimonas arsenicoxydans Muller et al. 2006, LMG 22961, LMG:22961, strain ULPAs1
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