STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_0358Diaminopimelate-binding protein / L-cystine-binding protein. (265 aa)    
Predicted Functional Partners:
Psyr_0357
Diaminopimelate ABC transporter membrane protein.
 0.999
Psyr_0356
L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein.
 
 0.990
Psyr_0973
Amino acid ABC transporter membrane protein, PAAT family; TC 3.A.1.3.-.
 
 0.980
Psyr_2943
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 
   0.980
Psyr_2964
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 
 0.979
Psyr_2504
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
 
 0.978
Psyr_2505
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 
 0.977
Psyr_4914
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
  
 0.977
Psyr_0297
Amino acid ABC transporter membrane protein 1, PAAT family; TC 3.A.1.3.-.
 
 0.976
Psyr_0296
Amino acid ABC transporter membrane protein 2, PAAT family; TC 3.A.1.3.-.
 
 0.975
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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