Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0484 | Psyr_0485 | Psyr_0484 | Psyr_0485 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | 0.935 |
Psyr_0484 | Psyr_0486 | Psyr_0484 | Psyr_0486 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | TonB, C-terminal. | 0.620 |
Psyr_0484 | Psyr_1298 | Psyr_0484 | Psyr_1298 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Exonuclease RecJ. | 0.503 |
Psyr_0484 | PyrC | Psyr_0484 | Psyr_0481 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Dihydroorotase. | 0.609 |
Psyr_0484 | alaS | Psyr_0484 | Psyr_3556 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.563 |
Psyr_0484 | coaD | Psyr_0484 | Psyr_4758 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.450 |
Psyr_0484 | gshB | Psyr_0484 | Psyr_0487 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.601 |
Psyr_0484 | miaA | Psyr_0484 | Psyr_0571 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.554 |
Psyr_0484 | pyrB | Psyr_0484 | Psyr_0482 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.610 |
Psyr_0484 | pyrR | Psyr_0484 | Psyr_0483 | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Uracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.588 |
Psyr_0485 | Psyr_0484 | Psyr_0485 | Psyr_0484 | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.935 |
Psyr_0485 | Psyr_0486 | Psyr_0485 | Psyr_0486 | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | TonB, C-terminal. | 0.613 |
Psyr_0485 | PyrC | Psyr_0485 | Psyr_0481 | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | Dihydroorotase. | 0.580 |
Psyr_0485 | gshB | Psyr_0485 | Psyr_0487 | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.628 |
Psyr_0485 | pyrB | Psyr_0485 | Psyr_0482 | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.610 |
Psyr_0485 | pyrR | Psyr_0485 | Psyr_0483 | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | Uracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.575 |
Psyr_0486 | Psyr_0484 | Psyr_0486 | Psyr_0484 | TonB, C-terminal. | Conserved hypothetical protein 250; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.620 |
Psyr_0486 | Psyr_0485 | Psyr_0486 | Psyr_0485 | TonB, C-terminal. | Protein of unknown function DUF179; Belongs to the UPF0301 (AlgH) family. | 0.613 |
Psyr_0486 | PyrC | Psyr_0486 | Psyr_0481 | TonB, C-terminal. | Dihydroorotase. | 0.456 |
Psyr_0486 | gshB | Psyr_0486 | Psyr_0487 | TonB, C-terminal. | Glutathione synthase; Belongs to the prokaryotic GSH synthase family. | 0.607 |
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