STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AvrRpm1Type III effector protein AvrRpm1. (228 aa)    
Predicted Functional Partners:
HrcC
Outer-membrane type III secretion protein HrcC.
      
 0.760
Psyr_3466
Flagellin, C-terminal:Flagellin, N-terminal; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.760
hopM1
Type III effector HopM1; Involved in the suppression of basal resistance and promotion of disease symptoms in plants. May be involved in the inhibition of a host vesicle trafficking pathway (By similarity).
      
 0.751
hopAE1
Type III effector HopAE1.
      
 0.670
AvrB3
Type III effector protein AvrB3.
      
 0.616
AvrE1
Type III effector protein AvrE1.
      
 0.465
Psyr_1302
Leucine-rich repeat protein.
      
 0.463
Psyr_3829
Leucine-rich repeat protein.
      
 0.463
Psyr_1704
Amino acid adenylation.
      
 0.426
Psyr_1705
Amino acid adenylation.
      
 0.426
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.