Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyr_0467 | rsmJ | Psyr_0467 | Psyr_1325 | Protein of unknown function UPF0153. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.426 |
Psyr_1324 | rsmJ | Psyr_1324 | Psyr_1325 | Conserved hypothetical protein. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.590 |
Psyr_5135 | rnpA | Psyr_5135 | Psyr_5136 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.980 |
Psyr_5135 | rsmJ | Psyr_5135 | Psyr_1325 | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.501 |
coaD | rsmJ | Psyr_4758 | Psyr_1325 | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.556 |
lolB | rsmJ | Psyr_0946 | Psyr_1325 | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.497 |
rnpA | Psyr_5135 | Psyr_5136 | Psyr_5135 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.980 |
rnpA | rsmJ | Psyr_5136 | Psyr_1325 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.476 |
rsmJ | Psyr_0467 | Psyr_1325 | Psyr_0467 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Protein of unknown function UPF0153. | 0.426 |
rsmJ | Psyr_1324 | Psyr_1325 | Psyr_1324 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Conserved hypothetical protein. | 0.590 |
rsmJ | Psyr_5135 | Psyr_1325 | Psyr_5135 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.501 |
rsmJ | coaD | Psyr_1325 | Psyr_4758 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.556 |
rsmJ | lolB | Psyr_1325 | Psyr_0946 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.497 |
rsmJ | rnpA | Psyr_1325 | Psyr_5136 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.476 |
rsmJ | uppP | Psyr_1325 | Psyr_3008 | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.506 |
uppP | rsmJ | Psyr_3008 | Psyr_1325 | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | Protein of unknown function DUF548; Specifically methylates the guanosine in position 1516 of 16S rRNA. | 0.506 |