Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PhnH | Psyr_2186 | Psyr_2252 | Psyr_2186 | Phosphonate metabolism. | Senescence marker protein-30 (SMP-30). | 0.550 |
PhnH | thiC | Psyr_2252 | Psyr_0544 | Phosphonate metabolism. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. | 0.560 |
Psyr_0764 | Psyr_1708 | Psyr_0764 | Psyr_1708 | Gluconolactonase. | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | 0.436 |
Psyr_0764 | Psyr_2186 | Psyr_0764 | Psyr_2186 | Gluconolactonase. | Senescence marker protein-30 (SMP-30). | 0.416 |
Psyr_1708 | Psyr_0764 | Psyr_1708 | Psyr_0764 | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | Gluconolactonase. | 0.436 |
Psyr_1708 | Psyr_1710 | Psyr_1708 | Psyr_1710 | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | Protein of unknown function DUF1238. | 0.727 |
Psyr_1708 | Psyr_1987 | Psyr_1708 | Psyr_1987 | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | 2-keto-3-deoxygalactonate kinase. | 0.472 |
Psyr_1708 | Psyr_2186 | Psyr_1708 | Psyr_2186 | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | Senescence marker protein-30 (SMP-30). | 0.935 |
Psyr_1710 | Psyr_1708 | Psyr_1710 | Psyr_1708 | Protein of unknown function DUF1238. | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | 0.727 |
Psyr_1710 | Psyr_2186 | Psyr_1710 | Psyr_2186 | Protein of unknown function DUF1238. | Senescence marker protein-30 (SMP-30). | 0.423 |
Psyr_1987 | Psyr_1708 | Psyr_1987 | Psyr_1708 | 2-keto-3-deoxygalactonate kinase. | L-arabinonate dehydratase; Belongs to the IlvD/Edd family. | 0.472 |
Psyr_1987 | Psyr_2186 | Psyr_1987 | Psyr_2186 | 2-keto-3-deoxygalactonate kinase. | Senescence marker protein-30 (SMP-30). | 0.462 |
Psyr_2183 | Psyr_2184 | Psyr_2183 | Psyr_2184 | Transcriptional regulator, GntR family. | Short-chain dehydrogenase/reductase SDR. | 0.795 |
Psyr_2183 | Psyr_2185 | Psyr_2183 | Psyr_2185 | Transcriptional regulator, GntR family. | Prokaryotic protein of unknown function DUF849. | 0.545 |
Psyr_2183 | Psyr_2186 | Psyr_2183 | Psyr_2186 | Transcriptional regulator, GntR family. | Senescence marker protein-30 (SMP-30). | 0.440 |
Psyr_2184 | Psyr_2183 | Psyr_2184 | Psyr_2183 | Short-chain dehydrogenase/reductase SDR. | Transcriptional regulator, GntR family. | 0.795 |
Psyr_2184 | Psyr_2185 | Psyr_2184 | Psyr_2185 | Short-chain dehydrogenase/reductase SDR. | Prokaryotic protein of unknown function DUF849. | 0.725 |
Psyr_2184 | Psyr_2186 | Psyr_2184 | Psyr_2186 | Short-chain dehydrogenase/reductase SDR. | Senescence marker protein-30 (SMP-30). | 0.524 |
Psyr_2185 | Psyr_2183 | Psyr_2185 | Psyr_2183 | Prokaryotic protein of unknown function DUF849. | Transcriptional regulator, GntR family. | 0.545 |
Psyr_2185 | Psyr_2184 | Psyr_2185 | Psyr_2184 | Prokaryotic protein of unknown function DUF849. | Short-chain dehydrogenase/reductase SDR. | 0.725 |
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