STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psyr_2186Senescence marker protein-30 (SMP-30). (292 aa)    
Predicted Functional Partners:
Psyr_1708
L-arabinonate dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.935
thiC
Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
      
 0.760
Psyr_2185
Prokaryotic protein of unknown function DUF849.
 
     0.666
Psyr_2187
General substrate transporter:Major facilitator superfamily.
 
     0.604
PhnH
Phosphonate metabolism.
      
 0.550
Psyr_2184
Short-chain dehydrogenase/reductase SDR.
 
  
 0.524
Psyr_1987
2-keto-3-deoxygalactonate kinase.
 
   
 0.462
Psyr_2183
Transcriptional regulator, GntR family.
       0.440
Psyr_1710
Protein of unknown function DUF1238.
 
     0.423
Psyr_0764
Gluconolactonase.
  
     0.416
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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